PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g009520.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 87aa    MW: 9844.32 Da    PI: 5.8812
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g009520.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB144.42.6e-451781794
               NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94
                        mkk lP+naki+k+ak+tvqecvsefisf+tseasdkcq+ekrktingddl+w+l+tlGfedy+eplk+yl +yre+e
  Solyc04g009520.2.1  1 MKKGLPTNAKIAKEAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLIWSLTTLGFEDYIEPLKAYLIRYREME 78
                        9***************************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008082.0E-20154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.3E-39178IPR009072Histone-fold
SuperFamilySSF471132.9E-30178IPR009072Histone-fold
PRINTSPR006153.0E-201937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.0E-203856No hitNo description
PRINTSPR006153.0E-205775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MKKGLPTNAK IAKEAKDTVQ ECVSEFISFI TSEASDKCQK EKRKTINGDD LIWSLTTLGF  60
EDYIEPLKAY LIRYREMEVC IASPHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-361761792Transcription factor HapC (Eurofung)
4g92_B8e-361761792Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3263582e-67S.lycopersicum DNA sequence from clone SL_MboI-40B16 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319295.11e-51PREDICTED: nuclear transcription factor Y subunit B-10-like
RefseqXP_004236819.11e-51PREDICTED: nuclear transcription factor Y subunit B-10-like
RefseqXP_010319294.11e-51PREDICTED: nuclear transcription factor Y subunit B-10-like
SwissprotQ67XJ22e-46NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLK4BPA84e-59K4BPA8_SOLLC; Uncharacterized protein
STRINGSolyc04g009520.2.11e-58(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-47nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]